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1

Breakdown of the law of rectilinear diameter and related surprises in the liquid-vapor coexistence in systems of patchy particles

Espinosa, Jorge R., Garaizar, Adiran, Vega, Carlos, Frenkel, Daan, Collepardo-Guevara, Rosana

Journal:

The Journal of Chemical Physics

Year:

2019

Language:

english

File:

PDF, 2.13 MB

english, 2019

2

Bimolecular reaction rates from ring polymer molecular dynamics: Application to H + CH4→ H2 + CH3

Suleimanov, Yury V., Collepardo-Guevara, Rosana, Manolopoulos, David E.

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 671 KB

english, 2011

3

Bimolecular reaction rates from ring polymer molecular dynamics

Collepardo-Guevara, Rosana, Suleimanov, Yury V., Manolopoulos, David E.

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 705 KB

english, 2009

4

Biomolecular modeling and simulation: a field coming of age

Schlick, Tamar, Collepardo-Guevara, Rosana, Halvorsen, Leif Arthur, Jung, Segun, Xiao, Xia

Journal:

Quarterly Reviews of Biophysics

Year:

2011

Language:

english

File:

PDF, 1.23 MB

english, 2011

5

Proton transfer in a polar solvent from ring polymer reaction rate theory

Collepardo-Guevara, Rosana, Craig, Ian R., Manolopoulos, David E.

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 673 KB

english, 2008

6

Publisher’s Note: “Bimolecular reaction rates from ring polymer molecular dynamics” [J. Chem. Phys. 130, 174713 (2009)]

Collepardo-Guevara, Rosana, Suleimanov, Yury V., Manolopoulos, David E.

Journal:

The Journal of Chemical Physics

Year:

2009

File:

PDF, 32 KB

2009

7

Breakdown of the law of rectilinear diameter and related surprises in the liquid-vapor coexistence in systems of patchy particles

Espinosa, Jorge R., Garaizar, Adiran, Vega, Carlos, Frenkel, Daan, Collepardo-Guevara, Rosana

Journal:

The Journal of Chemical Physics

Year:

2019

File:

PDF, 2.13 MB

2019

8

Characterization of the hepatitis B virus transactivators: A possible direct role of the virus in the development of hepatocellular carcinoma

Dr. Massimo Levrero, Clara Balsano, Maria Laura Avantaggiati, Gioacchino Natoli, Paolo Chirillo, Elisabetta de Marzio, Daniela Collepardo, Antonio Costanzo

Journal:

Journal of Surgical Oncology

Year:

1993

Language:

english

File:

PDF, 287 KB

english, 1993

9

A Hückel study of the effect of a molecular resonance cavity on the quantum conductance of an alkene wire

Rosana Collepardo-Guevara, Derek Walter, Daniel Neuhauser, Roi Baer

Journal:

Chemical Physics Letters

Year:

2004

Language:

english

File:

PDF, 441 KB

english, 2004

10

Global Mobility Task: index for evaluating motor impairment and motor rehabilitation programs in Parkinson’s disease patients

A. Peppe, A. Ranaldi, C. Chiavalon, A. Gasbarra, A. Collepardo, R. Romeo, P. Pasqualetti, C. Caltagirone

Journal:

Acta Neurologica Scandinavica

Year:

2007

Language:

english

File:

PDF, 593 KB

english, 2007

11

Maximizing the dynamic permeability during occlusions

R. Collepardo, E. Corvera Poiré

Journal:

The European Physical Journal Special Topics

Year:

2007

Language:

english

File:

PDF, 220 KB

english, 2007

12

Characterization of the hepatitis B virus preS/S region encoded transcriptional transactivator

Gioacchino Natoli, Maria Laura Avantaggiati, Clara Balsano, Elisabetta De Marzio, Daniela Collepardo, Emile Elfassi, Massimo Levrero

Journal:

Year:

1992

Language:

english

File:

PDF, 2.72 MB

english, 1992

13

Modeling Studies of Chromatin Fiber Structure as a Function of DNA Linker Length

Ognjen Perišić, Rosana Collepardo-Guevara, Tamar Schlick

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 3.22 MB

english, 2010

14

Preliminary Evaluation of the New TACR Flex Method Versus MEIA Method in the Therapeutic Monitoring of Tacrolimus in Organ Transplantation

A. Bachetoni, P. Mariani, M. D’Alessandro, V. Baiano, C. Appodia, D. Collepardo, P. Berloco

Journal:

Transplantation Proceedings

Year:

2007

Language:

english

File:

PDF, 70 KB

english, 2007

15

The Effect of Linker Histone's Nucleosome Binding Affinity on Chromatin Unfolding Mechanisms

Collepardo-Guevara, Rosana, Schlick, Tamar

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 1.34 MB

english, 2011

16

Reactive Oxygen Intermediates (ROIs) Are Involved in the Intracellular Transduction of Angiotensin II Signal in C2C12 Cells

PIER LORENZO PURI, MARIA LAURA AVANTAGGIATL, VITO LELIO BURGIO, PAOLO CHIRILLO, DANIELA COLLEPARDO, GIOACCHINO NATOLI, CLARA BALSANO, MASSIMO LEVRERO

Journal:

Annals of the New York Academy of Sciences

Year:

1995

Language:

english

File:

PDF, 749 KB

english, 1995

17

Erratum: “Bimolecular reaction rates from ring polymer molecular dynamics” [J. Chem. Phys. 130, 174713 (2009)]

Collepardo-Guevara, Rosana, Suleimanov, Yury V., Manolopoulos, David E.

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 380 KB

english, 2010

18

Insights into chromatin fibre structure by in vitro and in silico single-molecule stretching experiments

Collepardo‑Guevara, Rosana, Schlick, Tamar

Journal:

Biochemical Society Transactions

Year:

2013

Language:

english

File:

PDF, 507 KB

english, 2013

19

The activation of the immediate early proliferation dependent genes by pHBx involves the modification of cellular transcription factors

Avantaggiati, M.L., Natoli, G, Balsano, C, De Marzio, E, Collepardo, D, Artini, M, Levrero, M

Journal:

Journal of Hepatology

Year:

1991

File:

PDF, 70 KB

1991

20

Hepatitis C viral RNA in serum of Italian patients with chronic NANBH

Artini, M., De Marzio, E., Collepardo, D., Balsano, C., Perrone, A., Avantaggiati, M.L., Natoli, G., Bonavita, M.S., Levrero, H.

Journal:

Journal of Hepatology

Year:

1991

File:

PDF, 64 KB

1991

21

Characterization of the sequences acitivated by the truncated pre-S/S proteins

Natoli, G., Balsano, C, Avantaggiati, ML, De Marzio, E, Artini, M, Collepardo, D., Elfassi, E., Etudkowska, A., Levrero, M

Journal:

Journal of Hepatology

Year:

1991

File:

PDF, 71 KB

1991

22

Structure and Properties of DNA in Apolar Solvents

Arcella, Annalisa, Portella, Guillem, Collepardo-Guevara, Rosana, Chakraborty, Debayan, Wales, David J., Orozco, Modesto

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 4.42 MB

english, 2014

23

Chromatin fiber polymorphism triggered by variations of DNA linker lengths

Collepardo-Guevara, R., Schlick, T.

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.10 MB

english, 2014

24

Energy Landscapes, Folding Mechanisms, and Kinetics of RNA Tetraloop Hairpins

Chakraborty, Debayan, Collepardo-Guevara, Rosana, Wales, David J.

Journal:

Journal of the American Chemical Society

Year:

2014

Language:

english

File:

PDF, 4.07 MB

english, 2014

25

Controlling viscoelastic flow by tuning frequency during occlusions

Collepardo-Guevara, R., Poiré, E. Corvera

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 215 KB

english, 2007

26

Forced unraveling of chromatin fibers with nonuniform linker DNA lengths

Ozer, Gungor, Collepardo-Guevara, Rosana, Schlick, Tamar

Journal:

Journal of Physics Condensed Matter

Year:

2015

Language:

english

File:

PDF, 1.38 MB

english, 2015

27

Crucial role of dynamic linker histone binding and divalent ions for DNA accessibility and gene regulation revealed by mesoscale modeling of oligonucleosomes

Collepardo-Guevara, R., Schlick, T.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 3.99 MB

english, 2012

28

NAFlex: a web server for the study of nucleic acid flexibility

Hospital, A., Faustino, I., Collepardo-Guevara, R., Gonzalez, C., Gelpi, J. L., Orozco, M.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 8.38 MB

english, 2013

29

Dynamic condensation of linker histone C-terminal domain regulates chromatin structure

Luque, A., Collepardo-Guevara, R., Grigoryev, S., Schlick, T.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.41 MB

english, 2014

30

Presepsin as a potential marker for bacterial infection relapse in critical care patients. A preliminary study

Sargentini, Valeria, Ceccarelli, Giancarlo, D’Alessandro, Mariadomenica, Collepardo, Daniela, Morelli, Andrea, D’Egidio, Annalia, Mariotti, Sabrina, Nicoletti, Anna Maria, Evangelista, Berta, D’Ettorr

Journal:

Clinical Chemistry and Laboratory Medicine

Year:

2014

Language:

english

File:

PDF, 850 KB

english, 2014

31

Chromatin unfolding by epigenetic modifications explained by dramatic impairment of internucleosome interactions: a multiscale computational study

Collepardo-Guevara, Rosana, Portella, Guillem, Vendruscolo, Michele, Frenkel, Daan, Schlick, Tamar, Orozco, Modesto

Journal:

Journal of the American Chemical Society

Year:

2015

Language:

english

File:

PDF, 2.02 MB

english, 2015

32

Reactive Oxygen Intermediates Mediate Angiotensin II-induced c-Jun*c-Fos Heterodimer DNA Binding Activity and Proliferative Hypertrophic Responses in Myogenic Cells

Puri, P. L., Avantaggiati, M. L., Burgio, V. L., Chirillo, P., Collepardo, D., Natoli, G., Balsano, C., Levrero, M.

Journal:

Journal of Biological Chemistry

Year:

1995

Language:

english

File:

PDF, 319 KB

english, 1995

33

Copeptin Kinetics in Acute Ischemic Stroke May Differ According to Revascularization Strategies

Spagnolello, Ornella, De Michele, Manuela, Lorenzano, Svetlana, Cerulli Irelli, Emanuele, Naitana, Federico, Falcou, Anne, Letteri, Federica, Bachetoni, Alessandra, Collepardo, Daniela, Bertazzoni, Gi

Journal:

Year:

2019

Language:

english

File:

PDF, 215 KB

english, 2019

34

Phosphorylation of Intrinsically Disordered Regions within the Genome

Sridhar, Akshay, Portella, Guillem, Orozco, Modesto, Collepardo-Guevara, Rosana

Journal:

Biophysical Journal

Year:

2020

Language:

english

File:

PDF, 39 KB

english, 2020

35

Emergence of chromatin hierarchical loops from protein disorder and nucleosome asymmetry

Sridhar, Akshay, Farr, Stephen E., Portella, Guillem, Schlick, Tamar, Orozco, Modesto, Collepardo-Guevara, Rosana

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 2.38 MB

2020

36

Protein disorder-to-order transition enhances the nucleosome-binding affinity of H1

Sridhar, Akshay, Orozco, Modesto, Collepardo-Guevara, Rosana

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 3.54 MB

2020

37

Liquid network connectivity regulates the stability and composition of biomolecular condensates with many components

Espinosa, Jorge R., Joseph, Jerelle A., Sanchez-Burgos, Ignacio, Garaizar, Adiran, Frenkel, Daan, Collepardo-Guevara, Rosana

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 1.52 MB

2020

38

DNA binds to a specific site of the adhesive blood-protein von Willebrand factor guided by electrostatic interactions

Sandoval-PÃ©rez, AngÃ©lica, Berger, Ricarda M L, Garaizar, Adiran, Farr, Stephen E, Brehm, Maria A, KÃ¶nig, Gesa, Schneider, Stefan W, Collepardo-Guevara, Rosana, Huck, Volker, RÃ¤dler, JoachimÂ O, Ap

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 2.58 MB

2020

39

Expansion of Intrinsically Disordered Proteins Increases the Range of Stability of LiquidâLiquid Phase Separation

Garaizar, Adiran, Sanchez-Burgos, Ignacio, Collepardo-Guevara, Rosana, Espinosa, Jorge R.

Journal:

Year:

2020

File:

PDF, 20.07 MB

2020

40

DNA binds to a specific site of the adhesive blood-protein von Willebrand factor guided by electrostatic interactions

Sandoval-PÃ©rez, AngÃ©lica, Berger, Ricarda M L, Garaizar, Adiran, Farr, Stephen E, Brehm, Maria A, KÃ¶nig, Gesa, Schneider, Stefan W, Collepardo-Guevara, Rosana, Huck, Volker, RÃ¤dler, Joachim O, Apo

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 80 KB

2020

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